Link

Structure of Membrane Proteins

Stephen White Laboratory


Secondary structure prediction

kPROT server (Weizmann Institute)
Mpex and MPtopo (S.White)
DAS
DAS-TMfilter
PHDhtm (EMBL)
PRED-TMR (U. of Athens)
TMAP (EMBL)
TMPred
TMHMM-2.0
TopPred2
TMSTAT
SOSUI
BETTY (Beta-sheet prediction : Juelich)
TMBETAPRED-RBF (beta-sheet)
MemBrain
THUMBU
Phobius

Protein Structure Prediction

PEP-FOLD server
FOLDpro
PEPstr
Loopy

Sequence Alignment

Clustal Omega
ESPrint


Software/Visualization

GROMACS
GROMOS
MOE
CNS
Molscript
Rasmol
VMD
CPMD


Docking Programs

FleXX
AutoDock
RosettaDock
more docking software


Database

NCBI
ExPASy
PubMed
RCSB Protein Data Bank
Taiwan Pathogenic Microorganism Genome Database (Centers for Disease Control, R.O.C)
Uniprot
Human Protein Reference Database
Electron Microscopy Data Bank
Cybase
PepBank
Pubchem
NCI Database